Vorschau

Supplementary material - Efficient computational modelling of smooth muscle orientation and function in the aorta
- MATLAB source code - Numerical integration of the discrete fibre density
  - MAIN.m
    
    4.8 kB
  - evaluateRho.m
    
    230 Bytes
  - file_library
    - Example_excel_matlab
      - Excel_example_001.xlsx
        
        9.3 kB
      - Excel_example_002.xlsx
        
        9.4 kB
      - Simulation_001.mat
        
        354 Bytes
      - Simulation_002.mat
        
        526 Bytes
      - example_files_bibtex.bib
        
        1.4 kB
    - Test_file_01.m
      
      43 Bytes
    - Test_file_02.txt
      
      50 Bytes
    - Test_file_03.m
      
      50 Bytes
    - fc_lib_ListOfFiles_filter.m
      
      1.2 kB
    - fc_lib_allFilesName_to_ListOfFiles.m
      
      2.4 kB
    - fc_lib_backup_filename.m
      
      1.2 kB
    - fc_lib_copyfile_oldversion.m
      
      2.0 kB
    - fc_lib_createFile_AllFilesName.m
      
      2.5 kB
    - fc_lib_createFile_AllFilesName_ListOfFiles_filter.m
      
      1.6 kB
    - fc_lib_createFile_AllFoldersName.m
      
      2.3 kB
    - fc_lib_createFile_AllFoldersName_ListOfFiles_filter.m
      
      1.7 kB
    - fc_lib_file_add_header_to_file.m
      
      3.4 kB
    - fc_lib_file_load_excel_to_matlab.m
      
      3.3 kB
    - fc_lib_file_switch_case_generator.m
      
      1.7 kB
    - fc_lib_move_filelist_filter.m
      
      2.1 kB
    - fc_lib_pcode_folder.m
      
      1.3 kB
    - fc_lib_rename_allFilesName.m
      
      1.9 kB
    - fc_lib_save_file_extensao.m
      
      2.0 kB
    - fc_lib_save_variable_table.m
      
      3.1 kB
    - fc_lib_search_bibtex_entries.m
      
      2.6 kB
    - fc_lib_search_bibtex_entries_single_file.m
      
      1.6 kB
    - fc_lib_write_matrix_text.m
      
      1.5 kB
    - save_file_tex.m
      
      1.3 kB
    - script_search_bibtex_entries_change.m
      
      2.4 kB
  - gridSegments.csv
    
    562.8 kB
  - localRefinement.m
    
    945 Bytes
  - plotElements.m
    
    1.5 kB
  - plotSphericalElement.m
    
    748 Bytes
  - plotSphericalTriangle.m
    
    698 Bytes
  - quadrature.m
    
    990 Bytes
  - rho_n.txt
    
    134.6 kB
  - sphericalElementIntegration.m
    
    1.1 kB
  - sphericalTriangleIntegration.m
    
    2.0 kB
  - sphericalTriangleIntegration_subgrid.m
    
    1.1 kB
- Python source code - Regression algorithm with experimental data
  - Experimental Data
    - Adventitia
      - Preprocessed Data
        
        Dissected Aorta - Adventitia - Axial.csv
        
        340.7 kB
        
        Dissected Aorta - Adventitia - Circumferential.csv
        
        409.4 kB
      - Raw Data
        
        D10 rtaL 1.txt
        
        347.5 kB
        
        D10 rtac 1.txt
        
        419.2 kB
    - Collagen Fibre
      - Histology
        
        Preprocessed Data
        
        In-plane Histogram - Adventitia.csv
        
        17.5 kB
        
        In-plane Histogram - Media.csv
        
        42.9 kB
        
        Out-of-plane Histogram - Adventitia.csv
        
        527 Bytes
        
        Out-of-plane Histogram - Media.csv
        
        1.6 kB
        
        Raw Data
        
        Adventitia_T1-T3.xlsx
        
        62.6 kB
        
        Media_T1-T3.xlsx
        
        125.5 kB
        
        Re__Schriefl-Daten.zip
        
        267.4 kB
        
        Schriefl2012 - In-plane Histogram - Adventitia.PNG
        
        10.1 kB
        
        Schriefl2012 - In-plane Histogram - Media.PNG
        
        10.8 kB
      - Mechanical
        
        Preprocessed Data
        
        Collagen Fibre.csv
        
        4.9 kB
        
        Raw Data
        
        Tanishita2016 - Collagen.PNG
        
        17.2 kB
    - Elastic Fibre
      - Mechanical
        
        Preprocessed Data
        
        Elastic Fibre.csv
        
        3.9 kB
        
        Raw Data
        
        Tanishita2016 - Elastic Lamella.PNG
        
        16.1 kB
    - Media
      - Preprocessed Data
        
        Dissected Aorta - Media - Circumferential.bak.csv
        
        477.1 kB
        
        Dissected Aorta - Media - Circumferential.csv
        
        394.4 kB
      - Raw Data
        
        D10 rtmc 1.txt
        
        401.8 kB
    - Opening Angle
      - Preprocessed Data
        
        Opening Angles - DTA.csv
        
        125 Bytes
      - Raw Data
        
        Labrosse2009.PNG
        
        27.7 kB
    - Smooth Muscle
      - Histology
        
        Preprocessed Data
        
        In-plane Histogram - SMC.csv
        
        3.9 kB
        
        Raw Data
        
        Holzapfel2002.eps
        
        146.8 kB
      - Mechanical
        
        Human
        
        Scaled Experimental Data
        
        Active Smooth Muscle - Circumferential.csv
        
        3.4 kB
        
        Passive Smooth Muscle - Circumferential.csv
        
        3.4 kB
        
        Scaling Offsets.csv
        
        107 Bytes
        
        Porcine
        
        Preprocessed Data
        
        Active Smooth Muscle - Circumferential.csv
        
        3.3 kB
        
        Passive Smooth Muscle - Circumferential.csv
        
        3.4 kB
        
        Raw Data
        
        Murtada2012.PNG
        
        42.5 kB
  - Fitting Algorithms
    - lsq_aorta.py
      
      7.4 kB
    - lsq_collagen+elastic_fibre.py
      
      4.0 kB
    - lsq_smc.py
      
      6.9 kB
    - mle_collagen_fibres_adventitia.py
      
      5.1 kB
    - mle_collagen_fibres_media.py
      
      5.1 kB
    - mle_elastic_fibres.py
      
      892 Bytes
    - mle_smc+elastic_fibres.py
      
      3.7 kB
    - plot_histogram_examples.py
      
      2.4 kB
    - plot_lsq_smc_results.py
      
      5.0 kB
    - smc_data_scaling.py
      
      6.0 kB
  - Parameters
    - DFD
      - o_cf_adventitia_a=3,08,b=33,20,+50,72.csv
        
        228.4 kB
      - o_cf_adventitia_a=3,08,b=33,20,-50,72.csv
        
        226.1 kB
      - o_cf_media_a=3,62,b=34,30,+25,14.csv
        
        227.4 kB
      - o_cf_media_a=3,62,b=34,30,-25,14.csv
        
        226.2 kB
      - o_ef_b=34,30.csv
        
        247.8 kB
      - o_smc_a=4,07,b=100,0.csv
        
        226.2 kB
      - o_smc_a=4,07,b=100,10.csv
        
        226.2 kB
      - o_smc_a=4,07,b=100,20.csv
        
        226.2 kB
      - o_smc_a=4,07,b=100,30.csv
        
        226.2 kB
      - o_smc_a=4,07,b=100,40.csv
        
        226.2 kB
      - o_smc_a=4,07,b=100,50.csv
        
        226.2 kB
    - Parameters - 0°.csv
      
      117 Bytes
    - Parameters - 10°.csv
      
      117 Bytes
    - Parameters - 20°.csv
      
      118 Bytes
    - Parameters - 30°.csv
      
      118 Bytes
    - Parameters - 40°.csv
      
      116 Bytes
    - Parameters - 50°.csv
      
      116 Bytes
    - Parameters - Overview.csv
      
      524 Bytes
  - Uniaxial Active
    - Overlap - 0°.csv
      
      19.3 kB
    - Overlap - 10°.csv
      
      19.3 kB
    - Overlap - 20°.csv
      
      19.4 kB
    - Overlap - 30°.csv
      
      19.6 kB
    - Overlap - 40°.csv
      
      19.7 kB
    - Overlap - 50°.csv
      
      19.9 kB
    - Passive & Total Stress - 0°.csv
      
      28.5 kB
    - Passive & Total Stress - 10°.csv
      
      28.5 kB
    - Passive & Total Stress - 20°.csv
      
      28.5 kB
    - Passive & Total Stress - 30°.csv
      
      28.5 kB
    - Passive & Total Stress - 40°.csv
      
      28.5 kB
    - Passive & Total Stress - 50°.csv
      
      28.5 kB
    - Uniaxial Deformation - 0°.csv
      
      30.8 kB
    - Uniaxial Deformation - 10°.csv
      
      29.7 kB
    - Uniaxial Deformation - 20°.csv
      
      29.6 kB
    - Uniaxial Deformation - 30°.csv
      
      29.6 kB
    - Uniaxial Deformation - 40°.csv
      
      29.5 kB
    - Uniaxial Deformation - 50°.csv
      
      29.4 kB
    - Uniaxial Deformation - passive.csv
      
      21.4 kB
  - Uniaxial Passive
    - Adventitia
      - Experiment - Theory.csv
        
        278.3 kB
      - Passive Parameters.csv
        
        148 Bytes
    - Media
      - Experiment - Theory.csv
        
        322.7 kB
      - Passive Parameters.csv
        
        199 Bytes
  - bodies.py
    
    5.8 kB
  - constitutive.py
    
    2.9 kB
  - fitting.py
    
    2.9 kB
  - main.py
    
    2.4 kB
  - preprocessing.py
    
    5.5 kB
  - solver.py
    
    9.2 kB

Supplementary material - Efficient computational modelling of smooth muscle orientation and function in the aorta.zip